Maximizing lipophilic efficiency: the use of Free-Wilson analysis in the design of inhibitors of acetyl-CoA carboxylase

J Med Chem. 2012 Jan 26;55(2):935-42. doi: 10.1021/jm201503u. Epub 2012 Jan 11.

Abstract

This paper describes the design and synthesis of a novel series of dual inhibitors of acetyl-CoA carboxylase 1 and 2 (ACC1 and ACC2). Key findings include the discovery of an initial lead that was modestly potent and subsequent medicinal chemistry optimization with a focus on lipophilic efficiency (LipE) to balance overall druglike properties. Free-Wilson methodology provided a clear breakdown of the contributions of specific structural elements to the overall LipE, a rationale for prioritization of virtual compounds for synthesis, and a highly successful prediction of the LipE of the resulting analogues. Further preclinical assays, including in vivo malonyl-CoA reduction in both rat liver (ACC1) and rat muscle (ACC2), identified an advanced analogue that progressed to regulatory toxicity studies.

MeSH terms

  • Acetyl-CoA Carboxylase / antagonists & inhibitors*
  • Animals
  • Benzimidazoles / chemical synthesis*
  • Benzimidazoles / chemistry
  • Drug Design
  • Humans
  • Hypoglycemic Agents / chemical synthesis*
  • Hypoglycemic Agents / chemistry
  • Indazoles / chemical synthesis*
  • Indazoles / chemistry
  • Indoles / chemical synthesis*
  • Indoles / chemistry
  • Isoenzymes / antagonists & inhibitors
  • Liver / enzymology
  • Muscle, Skeletal / enzymology
  • Pyrazoles / chemical synthesis*
  • Pyrazoles / chemistry
  • Quantitative Structure-Activity Relationship
  • Rats
  • Spiro Compounds / chemical synthesis*
  • Spiro Compounds / chemistry

Substances

  • 2'-(tert-butyl)-1-(1H-indazole-5-carbonyl)-2'H-spiro(piperidine-4,5'-pyrano(3,2-c)pyrazol)-7'(6'H)-one
  • Benzimidazoles
  • Hypoglycemic Agents
  • Indazoles
  • Indoles
  • Isoenzymes
  • Pyrazoles
  • Spiro Compounds
  • Acetyl-CoA Carboxylase